Organoid Hero copy

Robust organoid monitoring
and quantification

Organoid Analysis Module

Complex models don’t have to mean complex analysis. Organoids represent an exciting avenue for disease research and discovery, bridging the gap between traditional 2D cell cultures and animal models. The Organoid Analysis Module for the CytoSMART Omni systems can identify, track, and analyze large numbers of organoids across an array of culture vessels with advanced machine-learning algorithms for faster, more accurate results. With the latest in live-cell imaging technology, take your research further.

Key features:

  • Accurate  – Minimize user-to-user variability with advanced image analysis that incorporates innovative machine-learning algorithms.
  • Fast  – Save time with simple software designed to identify every visible organoid across an entire plate.
  • Powerful – Get better data with software that assesses the number, size, eccentricity, and population distribution of organoids in a sample.

Great for following organoid growth and morphogenesis over time!

Ary Marsee Utrecht University

"The Omni is a great device for following organoid growth and morphogenesis over time across multiple conditions. The ability to image entire plates in the incubator allowed us to capture unique events and generate large data sets at ease."

Application Area: Follow organoid growth and morphogenesis over time

Take out the guesswork with advanced machine-learning algorithms

Manual organoid counting is a common practice in many labs, but this method is time-consuming and user-dependent. With the Organoid Analysis Module, quickly identify organoids, compare conditions, create population distributions, and chart development over time.

A better model starts with a better platform

Omni FL block

The Organoid Analysis Module for the CytoSMART Omni adds advanced organoid detection and quantification to the versatile imaging platform, enabling researchers to:

  • Track long-term development, label-free
  • Analyze undisturbed biology from within the incubator
  • Image every visible organoid within the well
  • Collect more data with less work, with automated acquisition and user-friendly analysis

Quantify organoids of all shapes and sizes

Irregularly shaped organoids 2

Organoids come in many shapes and sizes due to a variety of factors, including cell type, disease phenotype, and even culture conditions. The Organoid Analysis Module is able to detect and quantify a diverse range of organoid phenotypes.

With the Organoid Analysis Module, you can measure:

  • Number
  • Diameter
  • Area
  • Aspect ratio
  • Eccentricity/Roundness


Frequently Asked Questions

The Organoid Analysis Module is an AI-powered image analysis software, designed for streamlined detection and quantification of organoids. The module is compatible the Omni product family, including the CytoSMART Omni and the CytoSMART Omni FL.

Yes, if a customer already owns one of the CytoSMART Omni devices (Omni or Omni FL), then the Organoid Analysis Module can be purchased separately.

No, the Organoid Analysis Module is optimized to be used in label-free assays, providing a non-invasive approach for organoid monitoring and examination.

Any transparent culture vessel that is lower than 55 mm (2.2’’) (height of the light arc) can be scanned. Some examples include 6 – 384-well plates, Petri dishes, T25 – T225 flasks, microfluidic chips, and custom culture vessels. However, the user needs to keep in mind that the size of the scan area of the CytoSMART Omni and Omni FL is limited to 86 mm × 124 mm (3.4’’ × 4.9’’).

Sign up now

Want to stay up to date? Sign up for our newsletter

No, thanks